PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011754P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 257aa    MW: 26480.4 Da    PI: 10.5046
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011754P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.11.5e-3830124292
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.......k 89 
                     a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a++++ + s+  ++    g       +
  MELO3C011754P1  30 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSVSLSVRGNG---GGsaslsspS 121
                     78*******************************************************************8882222222222...2222333222 PP

             TCP  90 aak 92 
                     + +
  MELO3C011754P1 122 STT 124
                     222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3336121IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2093690IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSNSDHTNGV SNAAAIDSHK NQSSSNGALA VKKPPSKDRH SKVDGRGRRI RMPIICAARV  60
FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPANF SSVSLSVRGN GGGSASLSSP  120
SSTTSTLSLS RPQALSGPTP FILGKRVRSD DDAKDDGLGV GQAVGSIVGP TGPGGYWAIP  180
ARPDYGQVWS FAAAAPSEMV VQQGGISQQA SLFAQQQQPI REASAARVGN YLPGHLNLLA  240
SLSGGGGSGR REDDPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445886.10.0PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX29e-89TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1S3BDR10.0A0A1S3BDR1_CUCME; transcription factor TCP7-like
STRINGXP_008445886.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.19e-67TCP family protein