PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010977P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 212aa    MW: 23173.6 Da    PI: 8.0087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010977P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-183483255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++  +g+WvAeIr+p   + r +r +lg+f+t ++Aa a+++a+++l+g
  MELO3C010977P1 34 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSYDAALAYDNAARRLYG 83
                    69****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.93E-293391No hitNo description
PfamPF008477.6E-133483IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-303491IPR001471AP2/ERF domain
PROSITE profilePS5103221.7463491IPR001471AP2/ERF domain
SMARTSM003804.0E-353497IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-203491IPR016177DNA-binding domain
PRINTSPR003672.3E-93546IPR001471AP2/ERF domain
PRINTSPR003672.3E-95773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MLKSCSSNNK NNKKASSRKG CMRGKGGPEN ASCTYKGVRQ RTWGKWVAEI REPNRGARLW  60
LGTFDTSYDA ALAYDNAARR LYGSDAKLNL PLISSSTSVS VSSSSSTTSD NNNNNSVVAT  120
ASTYNNKVNP MVEDVASSSS SISNNKRFRE DEEEQIGGLW RAMSISLDDS IWVEAAMSLD  180
FPLLMEQQTS FSPNLVDTNP NPGWDSSIPW Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-203592361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444762.11e-153PREDICTED: dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ24e-52DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A1S3BAM01e-151A0A1S3BAM0_CUCME; dehydration-responsive element-binding protein 2D
STRINGXP_008444762.11e-152(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-43ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]