PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009420P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HD-ZIP
Protein Properties Length: 201aa    MW: 22622.5 Da    PI: 7.5675
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009420P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.66e-202679356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    k+ ++++eqle Le+ F+++ +++ +++++L+k+lgL+ rq+ vWFqNrRa++k
  MELO3C009420P1 26 KKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWK 79
                    45679************************************************9 PP

2HD-ZIP_I/II120.31e-3825117193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekk+rls+eq+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev +L++ l+e
  MELO3C009420P1  25 EKKKRLSSEQLESLERSFQEEIKLDPDRKQKLSKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRE 117
                     69**************************************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.29E-191583IPR009057Homeodomain-like
PROSITE profilePS5007117.1672181IPR001356Homeobox domain
SMARTSM003891.6E-172385IPR001356Homeobox domain
PfamPF000462.9E-172679IPR001356Homeobox domain
CDDcd000861.57E-162682No hitNo description
Gene3DG3DSA:1.10.10.604.0E-212888IPR009057Homeodomain-like
PRINTSPR000312.0E-55261IPR000047Helix-turn-helix motif
PROSITE patternPS0002705679IPR017970Homeobox, conserved site
PRINTSPR000312.0E-56177IPR000047Helix-turn-helix motif
PfamPF021831.3E-881115IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAGASETVLQ GLVPGMDMNS YGNLEKKKRL SSEQLESLER SFQEEIKLDP DRKQKLSKEL  60
GLQPRQIAVW FQNRRARWKA KQLEHLYDTL KQEFDAISRE KHKLQEEVMK LKSMLRELQA  120
ARNQVSTVYT DLSGEETVES TSVGAGCSSK PRPVAAAAAV AAANHYTTPP EQCNYVFNTE  180
EYNPMSPAFW GSLPSSYHPQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17381RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0956520.0KM095652.1 Cucumis sativus multicellular trichome development class I homeodomain-leucine zipper transcription factor (Gl) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138002.11e-148PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2
RefseqXP_008442780.11e-148PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X1
RefseqXP_008442781.11e-148PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2
RefseqXP_011651984.11e-148PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X1
SwissprotQ9LZR04e-49ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A097A1J61e-147A0A097A1J6_CUCSA; Multicellular trichome development class I homeodomain-leucine zipper transcription factor
TrEMBLA0A0A0LED81e-147A0A0A0LED8_CUCSA; Uncharacterized protein
TrEMBLA0A1S3B6J11e-147A0A1S3B6J1_CUCME; homeobox-leucine zipper protein ATHB-22-like isoform X1
TrEMBLA0A1S3B7771e-147A0A1S3B777_CUCME; homeobox-leucine zipper protein ATHB-22-like isoform X2
STRINGXP_008442780.11e-147(Cucumis melo)
STRINGXP_004138002.11e-147(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-39homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]