PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C009378P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 250aa    MW: 27322.6 Da    PI: 7.4201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C009378P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006389111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  MELO3C009378P1  89 YQCKTCDRCFPSFQALGGHRASH 111
                     9***********99999998887 PP

2zf-C2H214.10.00014169191123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  MELO3C009378P1 169 HECSICGAEFSSGQALGGHMRRH 191
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.86E-989111No hitNo description
SMARTSM003550.07789111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.84789116IPR007087Zinc finger, C2H2
PfamPF139123.2E-1089113IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576674.86E-9164191No hitNo description
Gene3DG3DSA:3.30.160.609.5E-4167191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.1E-13168192IPR007087Zinc finger, C2H2
SMARTSM003550.01169191IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743169191IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MAETPDENQA QIIKGKRTKR LRPSSVSSTS SSADCSSSSA GLTEEEEEDQ DLANCLILLA  60
QGRSRITEGC SSVFVEQKLV AANESLFLYQ CKTCDRCFPS FQALGGHRAS HKKPKFFNNV  120
IANSVEQQQQ QQENNFTTSN SIQLSLQLST ASRPPPPPTA GDLIKSKVHE CSICGAEFSS  180
GQALGGHMRR HRTLTATTTR PITTSTPQFI KKERNMLELD LNLPAPEDDR HRPPVAVFST  240
ASPLVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442730.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S3B5W60.0A0A1S3B5W6_CUCME; zinc finger protein ZAT5-like
STRINGXP_008442730.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-40C2H2 family protein