PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C008309P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 173aa    MW: 19111.6 Da    PI: 7.989
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C008309P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.21.8e-40121111100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+l+r+C + C++apyf +++pkkfa vhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i  lq ++ +l+++la
  MELO3C008309P1  12 SCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLA 106
                     6********************************************************************************************** PP

          DUF260  96 llkee 100
                     l+k++
  MELO3C008309P1 107 LAKAR 111
                     99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.39711112IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-3912109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRGWHETRSS SSCAACKLLK RRCIPTCIFA PYFRSDEPKK FAKVHKVFGA SNVSKILTEV  60
PEEQREDTVN SLAYEAEARL RDPVYGCIGA IALLQTKMVE LQHDLALAKA RLARYAHNNT  120
SSSSSSSSCA ENCVVNMSYG GLSFSAEQSS SDDITQYGYL CDFTHFPYPF KA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
GenBankLN6818150.0LN681815.1 Cucumis melo genomic scaffold, anchoredscaffold00008.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008441477.11e-128PREDICTED: LOB domain-containing protein 21-like
SwissprotQ9SRL81e-63LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A0A0KAD82e-97A0A0A0KAD8_CUCSA; Uncharacterized protein
STRINGVIT_13s0067g01450.t013e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59443353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.11e-59LOB domain-containing protein 21