PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C007769P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 350aa    MW: 38393.7 Da    PI: 5.3943
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C007769P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.2e-21156205255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  MELO3C007769P1 156 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDQAAYKLRG 205
                     59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.63E-33155215No hitNo description
Gene3DG3DSA:3.30.730.102.0E-32156214IPR001471AP2/ERF domain
PROSITE profilePS5103223.09156213IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-23156214IPR016177DNA-binding domain
SMARTSM003804.4E-37156219IPR001471AP2/ERF domain
PRINTSPR003673.3E-11157168IPR001471AP2/ERF domain
PfamPF008471.1E-14157205IPR001471AP2/ERF domain
PRINTSPR003673.3E-11179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAAAIDVYSG TSTPVYYSDP FSEELMKALQ PFMKSAISTS SSSSSSSYSP SPPPHPSVSS  60
QPRLIPDFCS PSSTRLFSQG FSGIEQMGFE QSGPIGLNNP TPSQILQIQA QIQLPSPTMS  120
SFSSSSSSFQ SQYHNFLTPK SFPMKHIGSP PKPTKLYRGV RQRHWGKWVA EIRLPKNRTR  180
LWLGTFDTAE EAALAYDQAA YKLRGDFARL NFPHLKHQFG DFKPLHPSVD AKLQSICQSL  240
KQGKTEVCSV EDEKPTTIPL PSESNSAVNN FWEPELKSEV ETSFSSSSSS PSRSEDYSTS  300
TGSSPDSSIS FLDFSDSQWG EGVEAFCLEK FPSIEIDWAA LSQLAESEC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22155213160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440612.10.0PREDICTED: ethylene-responsive transcription factor ERF060
TrEMBLA0A1S3B2970.0A0A1S3B297_CUCME; ethylene-responsive transcription factor ERF060
STRINGXP_008440612.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.19e-47ERF family protein