PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006626P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 325aa    MW: 35693 Da    PI: 6.0324
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006626P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.4e-1752100355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     + GVr+++ +gr++AeIrdp++   + r++lg+f+ta eAa a+++a+++++g
  MELO3C006626P1  52 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 100
                     56******.**********965...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.99E-2951107No hitNo description
PROSITE profilePS5103220.52151108IPR001471AP2/ERF domain
SMARTSM003808.0E-3351114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-2852108IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2052109IPR016177DNA-binding domain
PRINTSPR003672.1E-75263IPR001471AP2/ERF domain
PfamPF008478.6E-1154100IPR001471AP2/ERF domain
PRINTSPR003672.1E-77490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MATSKASDKG YPIYETGQSQ MGFALLQRNS SPISQNGGER RGRRKQAEPG RFLGVRRRPW  60
GRYAAEIRDP TTKERHWLGT FDTAHEAALA YDRAALSMKG TQARTNFIYS DTSTFHSLLT  120
AFDVQTNLLP NSDHSHSKLQ QITPPITTPN NQHNNNISFA QSQALNPSVI DDHDSNFFFS  180
NDSNSGYLSC IVPDNCLKPP SDSNYKTQPK NIHSSTTSND LKKFSFFASN SIETLPFEGL  240
DVYNNNNNGG YGSVMEEQQE IWESNGDELS AIINSSSSSS MVGENGGFHP FMNTSYGGLL  300
PQSSTCSPSA PSFGEAFDFG YTLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1942107571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438827.10.0PREDICTED: ethylene-responsive transcription factor ERF086
SwissprotQ6J9Q27e-64ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A1S3AY010.0A0A1S3AY01_CUCME; ethylene-responsive transcription factor ERF086
STRINGXP_008438827.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-59ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRĂ–SCHEN, DORNRĂ–SCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]