PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006453P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 174aa    MW: 19239.6 Da    PI: 8.8419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006453P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.2e-054163123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  MELO3C006453P1 41 YTCNFCKREFRSAQALGGHMNVH 63
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.25E-73868No hitNo description
Gene3DG3DSA:3.30.160.605.5E-43965IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.7E-64164IPR007087Zinc finger, C2H2
SMARTSM003550.00454163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2194168IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNTSTIGGGA NPSVKSQRNK VCRAATEEDF INGISWPPRS YTCNFCKREF RSAQALGGHM  60
NVHRRDRALL YSPPADGQFT NLNLNLLHNP NPNPNISSYD EVTFVGRKAS DLKLSSMTAE  120
IAAKPNMFER GHWKKGEKFN IGLDIEISTT SSTNVLNDSK MDIDLELRLG YST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-153663229superman protein
2l1o_A3e-153663229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438560.11e-128PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S3AWP01e-127A0A1S3AWP0_CUCME; transcriptional regulator SUPERMAN-like
STRINGXP_008438560.11e-128(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.16e-23C2H2 family protein