PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006432P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 139aa    MW: 15374.8 Da    PI: 5.298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006432P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.3e-202374256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr+++ +g+++AeIrd +    r   r++lg+f taeeAa+a+++a+ +++g+
  MELO3C006432P1 23 CYRGVRRRP-WGKFAAEIRDSR----RqgVRIWLGTFNTAEEAARAYDRAAYNMRGH 74
                    59*******.**********42....124**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.0512381IPR001471AP2/ERF domain
SMARTSM003802.8E-332387IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-232382IPR016177DNA-binding domain
PfamPF008471.5E-152374IPR001471AP2/ERF domain
CDDcd000182.93E-182482No hitNo description
PRINTSPR003671.3E-112435IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-312483IPR001471AP2/ERF domain
PRINTSPR003671.3E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDESGGRGRG HGDDLAGGSR EICYRGVRRR PWGKFAAEIR DSRRQGVRIW LGTFNTAEEA  60
ARAYDRAAYN MRGHLAILNF PNEYPLTSSG GGGAYYSSGS SSSSSMSMRQ NEVIEFEYLD  120
DKVLEDLLDY GEESDKRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3611231114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438537.11e-96PREDICTED: ethylene-responsive transcription factor ERF096
SwissprotQ9LTC51e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1S3AW983e-95A0A1S3AW98_CUCME; ethylene-responsive transcription factor ERF096
STRINGXP_008438537.15e-96(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]