PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C006183P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 232aa    MW: 24953.6 Da    PI: 8.7511
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C006183P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.94e-3924122198
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+k+l ++pe++r da+ +++yeA+ar+r+Pv G+v++i++lqqq ++l+ e+
  MELO3C006183P1  24 PCGACKFLRRKCTPECIFAPYFDSEQgTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQQQAARLQIEI 118
                     7***********************9988******************************************************************9 PP

          DUF260  95 allk 98 
                     ++l+
  MELO3C006183P1 119 SYLQ 122
                     9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.92323125IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-3824122IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSSRRSSGSC TKGKGGGSNG SGGPCGACKF LRRKCTPECI FAPYFDSEQG TTHFAAVHKV  60
FGASNVSKML LHIPEHKRLD AAITICYEAQ ARVREPVLGC VAHIFALQQQ AARLQIEISY  120
LQGYLATSEL PRPAPHLQAQ PPALVKKPTL SSIVSLPSDC PSFPAESDLS LLLDPVEQAS  180
QEKLQSPLES YQIGSNNFPS MVSIDQQVVQ KQLSSMQRIG ASLFPNVPKR S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438149.11e-170PREDICTED: LOB domain-containing protein 18
SwissprotO221318e-57LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0A0L4D41e-151A0A0A0L4D4_CUCSA; Uncharacterized protein
STRINGGLYMA03G02620.17e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-57LOB domain-containing protein 18