PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005960P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 350aa    MW: 39486.9 Da    PI: 7.3017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005960P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C +sFs+   L  H+r+H
  MELO3C005960P1  4 HKCKLCFRSFSNGRALGGHMRSH 26
                    79********************9 PP

2zf-C2H213.60.00019218240123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F++   L  H  +H
  MELO3C005960P1 218 YKCETCNKVFRSYQALGGHRASH 240
                     9***********99999998887 PP

3zf-C2H211.50.00094275297123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp C ++Fs+   L  H r+H
  MELO3C005960P1 275 HECPVCFRVFSSGQALGGHKRSH 297
                     79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.1E-5331No hitNo description
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
PfamPF139122.3E-6427IPR007087Zinc finger, C2H2
SMARTSM003550.065426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429218245IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-7218240No hitNo description
PfamPF139126.5E-12218242IPR007087Zinc finger, C2H2
SMARTSM003550.012218240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
SuperFamilySSF576671.92E-7270297No hitNo description
PROSITE profilePS501579.224275297IPR007087Zinc finger, C2H2
PfamPF139124.5E-11275297IPR007087Zinc finger, C2H2
SMARTSM003550.19275297IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDSHKCKLCF RSFSNGRALG GHMRSHMMNL PLPPKGEEDA APPHLHLCED GDSASFLSSP  60
SSSEGDEEEK GVSYGLRENP KRSIRVVDPE FSFAVDAASV VLQDRESETE SSKNPTRRRS  120
KRTRKPDRRH HHHLHRHYNV FKRLQEKKMN QPESWTEAEP VSSISGSTTE EDVAFWLMML  180
SRDKWTKQKE EEELEESMEE TDDSEAVKFP KNRNRGNYKC ETCNKVFRSY QALGGHRASH  240
KKIKVSLTYN NPQLGSHHEN AATPSSGSIA ERKIHECPVC FRVFSSGQAL GGHKRSHVTG  300
YSNPPKTAQK KFPDSLIDLN LPAPFEEDDV SQIELSAVSD ADFVNAIRQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437783.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A1S3AVF90.0A0A1S3AVF9_CUCME; zinc finger protein ZAT9
STRINGXP_008437783.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-60C2H2-like zinc finger protein