PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005530P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 263aa    MW: 30081.8 Da    PI: 7.7529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005530P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00089426123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    +kC+ C++ F++   L  H++ H
  MELO3C005530P1  4 HKCKLCSRAFTNGRALGGHMKAH 26
                    79******************998 PP

2zf-C2H2120.00063160181223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     kC++C+k F++   L +H + +
  MELO3C005530P1 160 KCEKCKKQFRSYRALFSHEKIC 181
                     7*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.054426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032431IPR007087Zinc finger, C2H2
SuperFamilySSF576675.54E-5429No hitNo description
PfamPF139129.8E-7427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM0035553159179IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85159186IPR007087Zinc finger, C2H2
PfamPF139120.002160177IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-6160224No hitNo description
SMARTSM003550.57202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432202224IPR007087Zinc finger, C2H2
PfamPF139121.6E-10202224IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVSHKCKLCS RAFTNGRALG GHMKAHLTAP PKPPPSPSSS FSDHDESTLY ELREENPKRG  60
DFRFSDPVFN IVLQDRESET ESKNPTRKRS KRWRKPEVEL EVEPASSVSD ASPEEDLAIC  120
LMMLSRDRWV ESQNQNEGRS WFEELGSKIK VKKGIRRKKK CEKCKKQFRS YRALFSHEKI  180
CQSEQEEEEE EEEEEGNRRR IFKCPFCYKL FGSGQALGGH KRSHLVSTTN NSSVSLKLQI  240
SLIDLNLPAP LEEDDYSVVS DA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147158KIKVKKGIRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437074.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A1S3ATN80.0A0A1S3ATN8_CUCME; zinc finger protein ZAT9
STRINGXP_008437073.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-38C2H2-like zinc finger protein