PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005358P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 256aa    MW: 29610.1 Da    PI: 10.2638
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005358P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.71.4e-40872272127
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......ssssaseceaesssssasnsssg.. 88 
                      gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWLl +++ aik+l +       +      + ++s+++s+ n+++g  
  MELO3C005358P1  87 RGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLLLNSNSAIKDLKQAyffkysN------SGQSSEVVSEINDNNGvv 175
                     68**************************************************************6665441......444444455444444455 PP

             TCP  89 .kaaksaakskksqksaasalnlak..esr..........akarararertr 127
                       aa+++  ++++q++ a +  +++  +sr           +ararar+rt 
  MELO3C005358P1 176 nVAASNHLDQQQDQEDVAFTGGFKDkiKSRtlrtgsrearDRARARARQRTL 227
                     4222222233333333333333333233334444443322667777777664 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-4088229IPR005333Transcription factor, TCP
PROSITE profilePS5136935.48789147IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDDHQQQQHR ENQILINSYD DHDLHYFPHP FLDDDDLFLS HFLSQQQQFF EQRDQQLDET  60
TKKMKKKKKL CGSSSSRING SNSTKRRGKK DRHSKIYTAQ GPRDRRMRLS LQIARKFFDL  120
QDMLGFDKAS KTIEWLLLNS NSAIKDLKQA YFFKYSNSGQ SSEVVSEIND NNGVVNVAAS  180
NHLDQQQDQE DVAFTGGFKD KIKSRTLRTG SREARDRARA RARQRTLLKN TLLPNPPITS  240
SISQHFDHLS VLKLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1214224RDRARARARQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656248.11e-144PREDICTED: transcription factor TCP12
TrEMBLA0A0A0KRR21e-143A0A0A0KRR2_CUCSA; Uncharacterized protein
STRINGXP_008437699.11e-144(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-29TCP domain protein 12