PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004556P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 304aa    MW: 34122.6 Da    PI: 6.1627
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004556P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34131052103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y+++ d+++++li ws+ +nsf+v d+ e+++++Lp+yFkh+nf+SFvRQLn+YgFkkv+ ++         weF+ ++F +g+k+ll++
  MELO3C004556P1  13 FVLKTYQMVTDPTTDDLIGWSKGNNSFIVADPLELSRRILPSYFKHNNFSSFVRQLNTYGFKKVDPDK---------WEFASQWFLRGQKHLLKN 98 
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r++++
  MELO3C004556P1  99 ICRRRHS 105
                     **99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-36397IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-489102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.7E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MESNQQNDAV APFVLKTYQM VTDPTTDDLI GWSKGNNSFI VADPLELSRR ILPSYFKHNN  60
FSSFVRQLNT YGFKKVDPDK WEFASQWFLR GQKHLLKNIC RRRHSRNSYF QTKCEDDDGE  120
IAIEISKLKQ EQRALELEVE SMNKRIEATE KRPQQMMAFL SKIMDNPEIL PRIILQNHRV  180
RRQLPSKRRR LVMPPPPPTP VKVESVLEED SSPEPGVFVD NVALSSPETT LWWDGAASAP  240
VSSPLTSDSG GGLSDYISLS PPDSDVSVYG IGGVRDGYMA ELVDGGGSRP PPPYPFSLFS  300
GGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-241010226129Heat shock factor protein 1
5d5v_B8e-241010226129Heat shock factor protein 1
5d5v_D8e-241010226129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186190KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016901258.10.0PREDICTED: heat stress transcription factor C-1-like
SwissprotQ9LV527e-81HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A1S4DZ610.0A0A1S4DZ61_CUCME; heat stress transcription factor C-1-like
STRINGXP_008458351.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-83heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]