PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002385P2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 551aa    MW: 60174.2 Da    PI: 5.776
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002385P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11366408754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  MELO3C002385P2 366 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 408
                     79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-16362424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9365408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15366420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.86E-13366412No hitNo description
CDDcd048738.42E-8479539No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MLSRVGNVLW MENREDEDSS SWTKNNNDHN HLNHPVNCSV LNNKDEITSL STFKSMLEVE  60
DDWCISANAL HNHNHHTDIN DITFSQNFTD PPDNLLLPPG DSSSSCSPSS SVFNNIDPSQ  120
LRFFLPPTRT LSSLHKVVSN NPLEHGFDLG AEVGFLDVQA SNASTLLNDG GGLLTGFTDL  180
SPTSQMNTPN LCLGSQLTAQ NVAPMGDNCS GLAGFQSFDE NLGNALLLNR SKLLRPLESF  240
PSVGAQPTLF QKRAALRKSL ADKGSNLGVL SPDGGWFSNR IEGGIGKNEM GDENGKKRKM  300
IYADELQDTS IDTSRFNYDS DDFTENTNTK LDESGRNVGN TSNANSTVTG GDQKGKKKGL  360
PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE  420
FSPSGAALTP GASFHPLTPT PPSLSSRIKE ELCPSSFPSP NGQPARVEVR VREGRAVNIH  480
MFCGRRPGLL LSTVRALDNL GLDIQQAVIS CFNGFAMDIF RAEQCSEGQD VHPEQIKAIL  540
LDSVGFNSAT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355373KKKGLPAKNLMAERRRRKK
2367374ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440093.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-131ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0A0LTY10.0A0A0A0LTY1_CUCSA; Uncharacterized protein
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-100bHLH family protein