PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002085P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 338aa    MW: 38909.9 Da    PI: 5.1447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002085P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-1598145354
             AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                     ykGVr++k +g+++AeIrd +     r +r +lg++ taeeAa a+ + + ++e
  MELO3C002085P1  98 YKGVRRRK-WGKYAAEIRDpF-----RgRRLWLGTYNTAEEAAVAYQRKKHEFE 145
                     9****998.**********66.....56******************88877765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-1796154IPR016177DNA-binding domain
PROSITE profilePS5103219.58597154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2197153IPR001471AP2/ERF domain
SMARTSM003802.9E-1697160IPR001471AP2/ERF domain
PRINTSPR003675.9E-998109IPR001471AP2/ERF domain
PfamPF008471.3E-998145IPR001471AP2/ERF domain
CDDcd000188.40E-2298139No hitNo description
PRINTSPR003675.9E-9120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MYGKEEKKMK QLKEGKSISM RKIRVLFHDP DATDYSSEED EHVSQGAKKI VWEIPIPDIH  60
RKPSEVSSQK ERADRVKFRA KTEVKDSSRR TQRSSSMYKG VRRRKWGKYA AEIRDPFRGR  120
RLWLGTYNTA EEAAVAYQRK KHEFESMQSM ENYSSELSGG KFEEKKIKSL VDDTAESEEI  180
IAMFSHPSPS SVLDLCTGSL CSNGLKNVIE EFNVDQTREH TITKKKSKAV LDGVENMLEY  240
ICNDEQHISN ILEEAPMSSM RMPIPPLDAR EMNFQVLEDN AMICNDFDQL SNDMNYIDNC  300
TLYNIENSLG AIDLPPMDIE FDKEFSWFDE TLSISCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1598161670ATERF1
3gcc_A5e-1598161670ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198104KGVRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137472.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
TrEMBLA0A0A0LTN00.0A0A0A0LTN0_CUCSA; Uncharacterized protein
STRINGXP_004161846.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.21e-21ERF family protein