PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002076P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 272aa    MW: 30977.1 Da    PI: 10.5907
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002076P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP84.52.6e-26321583133
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaksaa 95 
                      kkdrhski T++g RdRR+Rls+++a++fF Lqd+LG+dk skt+e    ++        ++++++     ++  + +++ ++++  k++ ++ 
  MELO3C002076P1  32 SKKDRHSKITTAKGVRDRRMRLSLPVAKQFFGLQDMLGVDKGSKTVEC---NSSSNYSNSSELDNEAGVIIGDQ--NLNTKDNNIKinKKKIKK- 120
                     69*********************************************8...44444444444434444222333..333333444432333333. PP

             TCP  96 kskksqksaasalnlakesrakarararertrekmrik 133
                     k+  + k+      +ake r+kar+rar rt ek++++
  MELO3C002076P1 121 KKIMRAKQLPIRKTMAKELREKARERARARTLEKQKNQ 158
                     44444444444689999*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-233278IPR005333Transcription factor, TCP
PROSITE profilePS5136923.7653391IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.959137154IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
SPPIDNMSMM MMNSDHKMKK MMKKVPQRKR LSKKDRHSKI TTAKGVRDRR MRLSLPVAKQ  60
FFGLQDMLGV DKGSKTVECN SSSNYSNSSE LDNEAGVIIG DQNLNTKDNN IKINKKKIKK  120
KKIMRAKQLP IRKTMAKELR EKARERARAR TLEKQKNQLF IRDSACCSYD HQPNFTNINS  180
SSSWSSPFET TGGEESAGTT HQSYNNNNHP ITSQFDSQFH QNFSSFDAIL PKWSPSDDST  240
FNFLHQQVYG LVASMLQVNN MGFYSQFSQG N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650456.11e-132PREDICTED: transcription factor TCP18-like
TrEMBLA0A0A0LVQ11e-130A0A0A0LVQ1_CUCSA; Uncharacterized protein
STRINGXP_008456501.11e-121(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.25e-19TCP family protein