PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002048P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SBP
Protein Properties Length: 549aa    MW: 60544.4 Da    PI: 7.7737
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002048P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.47.3e-42177253278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqv gC++dls+ k+yh+rhkvCevhsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk+q 
  MELO3C002048P1 177 CQVYGCNKDLSSSKDYHKRHKVCEVHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQV 253
                     **************************************************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-32173238IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.359174251IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-39175255IPR004333Transcription factor, SBP-box
PfamPF031101.4E-31177250IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MESWNYGSQG KGFLSDEMNS STNSPLRSKY SLLGWEFKNP CSFGDNMLLT SGAQHVENQS  60
FGELEFPQMV GKQLPDDSVS DVLNTKTDGG RNLNLVFPTS HPHHGEEEST SKLSGSIVDS  120
NNRDSSLIDL KLGRFIDQGD AHSSKYSKRA AISSSTESST SHKKMRSQGV NFQTAFCQVY  180
GCNKDLSSSK DYHKRHKVCE VHSKTAKVIV NGIEQRFCQQ CSRFHLLVEF DDGKRSCRKR  240
LAGHNERRRK PQVSFHSGRA QRLLQPYNGI GDGRFQEKTL TATSFICKDI LSSGLYYPEK  300
LGENDWCKRI KVEGKSDYNS ISATSLSNRH LNVKSPLLPY DFEVQLPPFQ ENGTSTAPTV  360
NMLSETTCQY SHNVGGPHID THPLFHQTTL SSEEFGVYDA ASTIQGLSGI PDSGCALSLL  420
SSQSQSASNH PSIVHIPRAF IMSESQSNYS MSELSEKLMG VSPQASSTGI TSKFASGMGE  480
AQMGPIPTCE SSDRTVTFQI PGRVLHRSGL ANPKANISYE RTPTIDLLQL SSQLQRVEHQ  540
RHSMQDSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291762501084squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453118.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_016899321.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
TrEMBLA0A1S3BWK90.0A0A1S3BWK9_CUCME; squamosa promoter-binding-like protein 12 isoform X1
STRINGXP_008453118.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18193493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.14e-50SBP family protein