PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C000391P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 315aa    MW: 35134 Da    PI: 7.0687
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C000391P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073137159123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  MELO3C000391P1 137 YECKTCNRTFPSFQALGGHRASH 159
                     99**********99999998887 PP

2zf-C2H213.70.00019209231123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  MELO3C000391P1 209 HECSICGLEFTSGQALGGHMRRH 231
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.8E-13136161IPR007087Zinc finger, C2H2
SuperFamilySSF576672.21E-5136164No hitNo description
PROSITE profilePS5015710.658137164IPR007087Zinc finger, C2H2
SMARTSM003550.052137159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-4200232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.21E-6205234No hitNo description
PfamPF139125.0E-12208233IPR007087Zinc finger, C2H2
PROSITE profilePS501579.785209236IPR007087Zinc finger, C2H2
SMARTSM003550.015209231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
METPDEFMPS NHQIHSILSL KRRRRNKRLR LLSSPPDTTS SSSCGGTDEF PAPSSSISGG  60
DTNNNNNSLL LHHHHHDDYH EISTEEEEDM ANCLILLAQG DSAHRRPTQN FPHPLKINPK  120
TSFNFEMAKT TAGFYVYECK TCNRTFPSFQ ALGGHRASHK KPKTTMVTAL EDQPEEPQLI  180
KIAASPVQIP TKTVTAGTNY QTHKGGKVHE CSICGLEFTS GQALGGHMRR HRATTTAMSS  240
AQQVVVATNT EEDNNNTNHH RHRSNSDERK ERNILELDLN LPAPEEDLRE TKFQFTATPQ  300
TIVFSSPTLV DCHY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11926LKRRRRNK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6855730.0LN685573.1 Cucumis melo genomic scaffold, unassembled_sequence33065.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466979.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1S3CSG90.0A0A1S3CSG9_CUCME; zinc finger protein ZAT5-like
STRINGXP_008466979.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.18e-58C2H2 family protein