PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla023342
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 438aa    MW: 47583.7 Da    PI: 6.2952
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla023342genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.61.3e-3543158389
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg............ 88 
                g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai++l +++  +++    + ++s  +a+++s++            
  Cla023342  43 GRKDRHSKVCTAKGPRDRRVRLSAHTAIEFYDVQDRLGYDRPSKAVDWLIKKAKPAIDKLRELPGWNPNVLdmSFDKSATQAEKNSENkipvaihppegs 142
                89*************************************************************5555544443222223333322222344555555555 PP

        TCP  89 ...............k 89 
                                
  Cla023342 143 ttrisdrranlvagdG 158
                5555444444444440 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-3243146IPR005333Transcription factor, TCP
PROSITE profilePS5136933.54444102IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MGEFSNQRPA KSSKTGIRSG GGGGGGGGEI VEVEGGRIVR SIGRKDRHSK VCTAKGPRDR  60
RVRLSAHTAI EFYDVQDRLG YDRPSKAVDW LIKKAKPAID KLRELPGWNP NVLDMSFDKS  120
ATQAEKNSEN KIPVAIHPPE GSTTRISDRR ANLVAGDGGI SECTMQNLPN TSTEENPNSD  180
NSSFLPPSFD SDSIVDTFKS FLPMTTTAAA ETPSSIFEFD AFPPDLLSRT SSRTQDLRLS  240
LQSLQGPTSK LESERTQHPI AQNHQNDHLY FSGTTPLGCF DGWSEQQPPP AMEISRLQRI  300
LHWNTVSADH SGSGDGGDGG VNGEFLYNSQ PTTSCLPPPS LPLPILQPLF GENQLVSQRG  360
PLQSSYTPSI RAWIDPSITF VDNQQHQIPT SIYQSSFPGL GFASGGFSRF LIPARIPGEE  420
EHDGISEKPS SASSNSRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-2049102154Putative transcription factor PCF6
5zkt_B5e-2049102154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818620.0LN681862.1 Cucumis melo genomic scaffold, anchoredscaffold00081.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463723.10.0PREDICTED: transcription factor TCP4
TrEMBLA0A1S3CJX50.0A0A1S3CJX5_CUCME; transcription factor TCP4
STRINGXP_004163640.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.35e-75TCP family protein