PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022939
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 517aa    MW: 53272.4 Da    PI: 7.5207
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022939genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.67.5e-411462815112
        TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............... 88 
                k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  + s +ss+s+ s++               
  Cla022939 146 KRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNISIRSSGSTLSAPpsksaphsfhgalal 245
                89****************************************************************8886555555555543333444555666666666 PP

        TCP  89 ............kaaksaa.kskksqksaasalnlak 112
                            + a+    +++++q++++++lnl+ 
  Cla022939 246 ahhphaydegfaH-AALLGfHQHQQQQQQQHQLNLMT 281
                6666677776642.33333355555555555566655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-40148279IPR005333Transcription factor, TCP
PROSITE profilePS5136928.496149203IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MELTDMQQSN KQQQQQQQQH HQLHHQNQNQ KRGSSQSQSQ SPSPSPSPSP QQHLHGVPFD  60
GRSPVSAAAA TGGGGGGGAP PFMASISSLV SLPPPSSSNS SVSSASNAAA PPPHLDASLV  120
IATRSDTTTT TTDPSPRSAS NNNALKRSTK DRHTKVDGRG RRIRMPATCA ARVFQLTREL  180
GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI RSSGSTLSAP PSKSAPHSFH  240
GALALAHHPH AYDEGFAHAA LLGFHQHQQQ QQQQHQLNLM TADQIGDTLP TGGGGGDSTD  300
NYMRKRFRED LFKEDTQSPG ESSGGAGSPK AMKSDLQLEK QQPPSASSSG LLRPGAAMWA  360
VAAPGPSSGA SNTFWMLPVT TGSGGGNVGS SGGGGGGGVG GMEAHQMWPF STSGNTLQAP  420
LHLMPRFNIP EIQAAAAAAG GRGGGQLQLG SMLMQQGGGG GGGLGVTESN LGMLAALNAA  480
YSRGGGFNIN SDHNHPLENH PHTHTTDSGD EAPNTSQ
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023542114.10.0transcription factor TCP8
SwissprotQ9C5185e-81TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A0A0KPT31e-171A0A0A0KPT3_CUCSA; Uncharacterized protein
STRINGXP_004135523.11e-175(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.16e-50TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]