PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022557
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 224aa    MW: 25248.2 Da    PI: 10.5445
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022557genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.46.9e-15127207187
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                f+k +++s+v+   +l lp +f++ h +++ ++  +tl de+g +++  +  rk++    l++GWk+F  a++L +gD vvF++++ 
  Cla022557 127 FIKSMLQSHVSGGFWLGLPSHFCKIH-LPN-RDGVMTLIDEDGDEYSTIYLARKTG----LSGGWKGFSVAHKLADGDAVVFQFIKP 207
                89*********************666.443.4458***************656665....***********************8874 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.81E-22120215IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-17121214IPR015300DNA-binding pseudobarrel domain
CDDcd100175.76E-22125210No hitNo description
PfamPF023621.6E-12127210IPR003340B3 DNA binding domain
PROSITE profilePS5086310.644127218IPR003340B3 DNA binding domain
SMARTSM010193.5E-18127220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MGIANLSYEE CRRKRLEENK KRMEALNLPL LSQALLDSSP SKSSPSKLTK PRVTQKQLVV  60
VRRSSRVAKQ SAPVYAEVVV NRVVIPRRIS KARDFSNRVY ASDDARKNAF ERAEQLQSGL  120
DPNYPNFIKS MLQSHVSGGF WLGLPSHFCK IHLPNRDGVM TLIDEDGDEY STIYLARKTG  180
LSGGWKGFSV AHKLADGDAV VFQFIKPTRC KVIFLHHFAG FKIL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818238e-83LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132578e-83LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444633.11e-141PREDICTED: B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ42e-69Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A1S3BAR21e-140A0A1S3BAR2_CUCME; B3 domain-containing protein At5g42700-like
STRINGXP_008444633.11e-141(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-58B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]