PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022231
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 351aa    MW: 39435.3 Da    PI: 8.4249
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022231genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1775.1e-55271541128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhP+deel+++yL +k+++ +++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++el
  Cla022231  27 LPPGFRFHPSDEELITFYLLNKISDANFTG-RAITDVDLNKFEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSnTSEL 125
                79*************************999.89***************99999****************************************9867788 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfykgrap+gekt+Wvmheyrl
  Cla022231 126 VGMKKTLVFYKGRAPRGEKTNWVMHEYRL 154
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.23E-6425175IPR003441NAC domain
PROSITE profilePS5100561.11527175IPR003441NAC domain
PfamPF023654.0E-2828154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MTESDHHHRR HHQDTHAQDE EDKDQTLPPG FRFHPSDEEL ITFYLLNKIS DANFTGRAIT  60
DVDLNKFEPW ELPGKAKMGE KEWYFFSLRD RKYPTGVRTN RATNTGYWKT TGKDKEIFNS  120
NTSELVGMKK TLVFYKGRAP RGEKTNWVMH EYRLHSKTAF RTAKDEWVVC RVFQKSPGAK  180
KYPPNQSRAV NPYVNLEIPP SLLPPPIMQL GDPAAQYSYG RNYITSTELA ELNRVLRASG  240
GSGGSGGSTH GINLSMQPQF NYPTTGGCFT ISGLNLNLGG AVSVSQPVLR PMPPPVATTT  300
IGQDIASSVM ASSIAPETAY GAEINNNANV PSNRFMNMDH CMDLENYWHT W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-572618116171NO APICAL MERISTEM PROTEIN
1ut4_B7e-572618116171NO APICAL MERISTEM PROTEIN
1ut7_A7e-572618116171NO APICAL MERISTEM PROTEIN
1ut7_B7e-572618116171NO APICAL MERISTEM PROTEIN
3swm_A8e-572618119174NAC domain-containing protein 19
3swm_B8e-572618119174NAC domain-containing protein 19
3swm_C8e-572618119174NAC domain-containing protein 19
3swm_D8e-572618119174NAC domain-containing protein 19
3swp_A8e-572618119174NAC domain-containing protein 19
3swp_B8e-572618119174NAC domain-containing protein 19
3swp_C8e-572618119174NAC domain-containing protein 19
3swp_D8e-572618119174NAC domain-containing protein 19
4dul_A7e-572618116171NAC domain-containing protein 19
4dul_B7e-572618116171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-153LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-153LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004138783.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
TrEMBLA0A0A0LS520.0A0A0A0LS52_CUCSA; Uncharacterized protein
STRINGXP_004138783.10.0(Cucumis sativus)
STRINGXP_004160780.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-108NAC domain containing protein 38