PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022076
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 289aa    MW: 31360.2 Da    PI: 8.2783
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022076genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.6e-23107208199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +a+++         + +  +tl+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   ++s++ ++
  Cla022076 107 FAKILTSSDANNGGGFSVPRYCADSIfpplnyqV-E-PPVQTLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDAVIFA--RNSSGDMF 202
                89****************************9743.3.33359************************************************..5699999* PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+++r 
  Cla022076 203 VGIRRV 208
                ***996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-34102209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-31102209IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76107209IPR003340B3 DNA binding domain
CDDcd100177.02E-21107207No hitNo description
PfamPF023625.1E-21107208IPR003340B3 DNA binding domain
SMARTSM010193.5E-19107209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MMDPNLWRAF AGNSAHIHTV GSEVYYFVQG HVEQATYVPT LSRSVIANPT TKCIITSADY  60
SADSLSDEVC LKLNLNPIRP GESGSELVSG FGCSDEGSGK RNRIEKFAKI LTSSDANNGG  120
GFSVPRYCAD SIFPPLNYQV EPPVQTLSIT DVHGVVWNFR HIYRGTPRRH LLTTGWSKFV  180
NHKKLVAGDA VIFARNSSGD MFVGIRRVTS TRAIIGGDCS RWNIQIGGGG GRCNVEEKRS  240
GDGGNDNFSR SNIGKVPAEA VANAAELSAQ FKPFEVVYYP RAGLSEFAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-48120750258Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445361.21e-176PREDICTED: auxin response factor 17
SwissprotQ84WU63e-86ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1S3BD991e-175A0A1S3BD99_CUCME; Auxin response factor
STRINGXP_008445361.11e-174(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-83auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]