PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021527
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 141aa    MW: 15669 Da    PI: 5.3298
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021527genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-192576256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
               +y+GVr+++ +g+++AeIrd +    r   r++lg+f taeeAa+a+++a+ +++g+
  Cla021527 25 RYRGVRRRP-WGKFAAEIRDSR----RqgVRIWLGTFNTAEEAARAYDRAAYNMRGH 76
               59*******.**********42....124**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.5382583IPR001471AP2/ERF domain
SMARTSM003807.3E-342589IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-312585IPR001471AP2/ERF domain
PfamPF008473.5E-152576IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-232584IPR016177DNA-binding domain
CDDcd000189.73E-182584No hitNo description
PRINTSPR003671.3E-112637IPR001471AP2/ERF domain
PRINTSPR003671.3E-114965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MDESGGRGRS YAEDSTTAGG SREIRYRGVR RRPWGKFAAE IRDSRRQGVR IWLGTFNTAE  60
EAARAYDRAA YNMRGHLAIL NFPNEYPLTS SGGGGGAYSS GSSSSSSSMS MRQNEVIEFE  120
YLDDKVLEDL LDYGEESDKR S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-36201269114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818481e-127LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132601e-127LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023529041.17e-68ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0A0L9V57e-57A0A0A0L9V5_CUCSA; Uncharacterized protein
STRINGXP_004170780.11e-57(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-32ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]