PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021305
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 180aa    MW: 19749.9 Da    PI: 9.2283
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021305genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-39181181100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC ++C++apyf +eq + +fa+vhk+FGasnv+k+l ++pe++r da+ +++yeA+ar+r+Pv G+v++i++lqqq ++l++e+++l++
  Cla021305  18 PCGACKFLRRKCMPECIFAPYFDSEQgTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQA 117
                7***********************9988********************************************************************9998 PP

     DUF260 100 e 100
                +
  Cla021305 118 H 118
                6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.94217119IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-3818116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSSRRSRGSC PEGKGGGPCG ACKFLRRKCM PECIFAPYFD SEQGTTHFAA VHKVFGASNV  60
SKMLLHIPEH KRLDAAITIC YEAQARVREP VFGCVAHIFA LQQQAARLQV EISYLQAHLA  120
TSELPRPAPN LQAQPPALVK KPTLSSIIFL DFSIPSSKLH GRSCNLPWNC PKLEATVSHP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132601e-113LN713260.1 Cucumis melo genomic chromosome, chr_6.
GenBankLN6818481e-113LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008438149.14e-91PREDICTED: LOB domain-containing protein 18
SwissprotO221313e-58LBD18_ARATH; LOB domain-containing protein 18
TrEMBLA0A0A0L4D42e-90A0A0A0L4D4_CUCSA; Uncharacterized protein
STRINGGSMUA_Achr5P11330_0014e-62(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.18e-59LOB domain-containing protein 18