PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021089
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 376aa    MW: 42504.6 Da    PI: 5.4843
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021089genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008426123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               +kC+ C +sFs+   L  H+r+H
  Cla021089  4 HKCKLCFRSFSNGRALGGHMRSH 26
               79********************9 PP

2zf-C2H213.50.00021241263123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ C+k+F++   L  H  +H
  Cla021089 241 YKCETCNKVFRSYQALGGHRASH 263
                9***********99999998887 PP

3zf-C2H211.40.001300322123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++Cp C ++Fs+   L  H r+H
  Cla021089 300 HECPVCFRVFSSGQALGGHKRSH 322
                79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.6E-8326No hitNo description
PfamPF139121.6E-6327IPR007087Zinc finger, C2H2
SMARTSM003550.065426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.679431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.6E-8236263No hitNo description
PfamPF139127.2E-12241265IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.429241268IPR007087Zinc finger, C2H2
SMARTSM003550.012241263IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
SuperFamilySSF576676.37E-5297324No hitNo description
PfamPF139124.9E-11300322IPR007087Zinc finger, C2H2
SMARTSM003550.19300322IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349300327IPR007087Zinc finger, C2H2
PROSITE patternPS000280302322IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description