PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020655
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 299aa    MW: 33237.6 Da    PI: 7.8283
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020655genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.52.4e-27141541128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.........leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                lppG++F P+de+l+ +yL +k++++           +  + ik++d ++++P dLp         ++++k+wy+++ ++ +++   r +  +ksgyW+ 
  Cla020655  14 LPPGCHFFPSDEQLLRFYLSNKTTATIspnllnngaSKGYNLIKDLDPFDYDPFDLPDfacfsyGSRGRKKHWYYYAVTAFREN---RGRIRMKSGYWRR 110
                79********************98877556655554333448***************44777654445778*****99987654...44445689***** PP

        NAM  86 tgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                +g+ +ev+ ++g + g+k+++vfy g + ++++kt+W+m ey+l
  Cla020655 111 KGRVREVIGHRGVVLGMKRSFVFYLGnSIKNAVKTNWIMYEYAL 154
                ************************874678899*********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-3310169IPR003441NAC domain
PROSITE profilePS5100533.29814170IPR003441NAC domain
PfamPF023654.1E-1715154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEHTQSLEPS SSSLPPGCHF FPSDEQLLRF YLSNKTTATI SPNLLNNGAS KGYNLIKDLD  60
PFDYDPFDLP DFACFSYGSR GRKKHWYYYA VTAFRENRGR IRMKSGYWRR KGRVREVIGH  120
RGVVLGMKRS FVFYLGNSIK NAVKTNWIMY EYALGDHFKA SCVLHRVFVS GRGNSISGNG  180
LSSYGDGSVS AICHNGNQQD GIQVTNMVEA GPCEGDTLNT NNGITRHVMV RAEKPNCLLV  240
TEPVSAPTTS QVPSEAHPCE MMTSSPVIPP GSMPTHVIDK QKLISILEGD FLELDDLVD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-171315416142NO APICAL MERISTEM PROTEIN
1ut4_B3e-171315416142NO APICAL MERISTEM PROTEIN
1ut7_A3e-171315416142NO APICAL MERISTEM PROTEIN
1ut7_B3e-171315416142NO APICAL MERISTEM PROTEIN
3swm_A3e-171315419145NAC domain-containing protein 19
3swm_B3e-171315419145NAC domain-containing protein 19
3swm_C3e-171315419145NAC domain-containing protein 19
3swm_D3e-171315419145NAC domain-containing protein 19
3swp_A3e-171315419145NAC domain-containing protein 19
3swp_B3e-171315419145NAC domain-containing protein 19
3swp_C3e-171315419145NAC domain-containing protein 19
3swp_D3e-171315419145NAC domain-containing protein 19
4dul_A3e-171315416142NAC domain-containing protein 19
4dul_B3e-171315416142NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818611e-119LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
GenBankLN7132611e-119LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022143484.11e-163NAC domain-containing protein 19-like isoform X2
TrEMBLA0A1S3BU621e-159A0A1S3BU62_CUCME; protein CUP-SHAPED COTYLEDON 3-like
STRINGXP_008452571.11e-160(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-14NAC domain containing protein 74