PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020609
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 203aa    MW: 22136 Da    PI: 6.6517
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020609genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927.1e-292103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C++ Cvl+  +     p++q +++ +++k+FG+s +l++++a+p ++r+++++sl++eA+ r+ +Pv+Gavg++ +++++++q++a+++
  Cla020609   2 SCNGCRVLRKGCSETCVLRSSLhwidsPEAQGNATLFLAKFFGRSDLLSFISAVPYHQRPALFQSLLFEACGRTVNPVSGAVGLLYSGNWHVCQAAADTV 101
                6***********************************************************************************************9987 PP

     DUF260  96 ll 97 
                l 
  Cla020609 102 LN 103
                65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6631107IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSETCVLR SSLHWIDSPE AQGNATLFLA KFFGRSDLLS FISAVPYHQR  60
PALFQSLLFE ACGRTVNPVS GAVGLLYSGN WHVCQAAADT VLNGGVLRPI PGIESSGNPI  120
PNVDDSALTF NTDVWTTTTH NLQFYPSTPS DFRCLPDLAL GRAKNHPLEN RRSLDSEESV  180
MTSFGSGDLG DQRKETKLLN LFV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132611e-141LN713261.1 Cucumis melo genomic chromosome, chr_7.
GenBankLN6818611e-141LN681861.1 Cucumis melo genomic scaffold, anchoredscaffold00029.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008452637.11e-140PREDICTED: LOB domain-containing protein 39-like
SwissprotQ9SZE83e-66LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A0A0L3S51e-140A0A0A0L3S5_CUCSA; Uncharacterized protein
STRINGPOPTR_0002s12020.12e-69(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-67LOB domain-containing protein 39