PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 257aa    MW: 26673.7 Da    PI: 10.5046
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020050genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.32.7e-3834127393
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....kaaks 93 
                +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ ++s s+ ++  s++    ++ +s
  Cla020050  34 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFS-SVSLSVRGNGGSASlsspSSTTS 127
                79******************************************************************888.33333333322222322222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.3E-3439126IPR005333Transcription factor, TCP
PROSITE profilePS5136928.2093993IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSNSDHTTNA NGVSNAAAIE THKNQPSSNG ALVVKKPPSK DRHSKVDGRG RRIRMPIICA  60
ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ANFSSVSLSV RGNGGSASLS  120
SPSSTTSTLS LSRPQALSGP TPFILGKRVR SDDDGKDDGL GVGQAVGSIV GPTGPGGYWA  180
IPARPDYGQV WSFAAAAPSE MVVQPGGISQ QASLFAQQQQ PIREASAARV GNYLPGHLNL  240
LASLSGGGSG RREDDPR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445886.11e-149PREDICTED: transcription factor TCP7-like
SwissprotQ9FMX29e-90TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A1S3BDR11e-148A0A1S3BDR1_CUCME; transcription factor TCP7-like
STRINGXP_008445886.11e-149(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54693153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.13e-62TCP family protein