PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019693
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 336aa    MW: 37800.4 Da    PI: 9.318
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019693genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM88.21.5e-27572141128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpk................kvkaeekew..yfFskrdkkyatgkrk 74 
                lp+G++F+Ptd+e++ e+L++k+ ++       ++++   ++   +i++++P++Lp                 k+++e+++    fF ++  +y+tg+rk
  Cla019693  57 LPAGVKFDPTDQEIL-EHLEAKAISDVrklhplIDEFIPtLEGEnGICYTHPQKLPVrgihglgwrhffgpirKFRSEQRRAnpAFFPPT--TYPTGTRK 153
                799***********9.889998766653664442222222333336**********5355666666665555533333332222455443..45567777 PP

        NAM  75 nra......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +r+       ++ +W++tgk+++v+  +g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Cla019693 154 RRKvhtdeeGNETRWHKTGKTRPVFI-GGAVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 214
                77556554434788************.9*************66589**************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-3251233IPR003441NAC domain
PROSITE profilePS5100528.52757233IPR003441NAC domain
PfamPF023658.0E-1458214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTWCSGSDDE SSPSIHQLTK SNDASILHHP SPAVRCPSCG HQIQLQDQAG IHDLPGLPAG  60
VKFDPTDQEI LEHLEAKAIS DVRKLHPLID EFIPTLEGEN GICYTHPQKL PVRGIHGLGW  120
RHFFGPIRKF RSEQRRANPA FFPPTTYPTG TRKRRKVHTD EEGNETRWHK TGKTRPVFIG  180
GAVKGFKKIL VLYTNYGRQR KPEKTNWVMH QYHLGNNEEE KDGELVVSKV FYQTQPRQCS  240
STAAATNNNN PLLQSEIKFK NAANHHRHHP DSTATGAVDY YNAAASNNNT NFISFDHNSE  300
PAVPQLLPNL VLSGDGSTFI RFPPADTTKR KLDRKI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-159LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-159LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653355.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotO494591e-101NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0A0LV710.0A0A0A0LV71_CUCSA; Uncharacterized protein
STRINGXP_004148793.11e-180(Cucumis sativus)
STRINGXP_004167470.11e-180(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-101NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]