PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018759
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family AP2
Protein Properties Length: 353aa    MW: 40142.6 Da    PI: 7.9135
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018759genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.5e-124197155
        AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
               s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Cla018759 41 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 97
               57*******************99998898888888********************98 PP

2AP251.32.9e-16140191155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Cla018759 140 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDIAAIEYRG 191
                89****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.84E-1541106IPR016177DNA-binding domain
PfamPF008472.4E-84197IPR001471AP2/ERF domain
PROSITE profilePS5103218.62442105IPR001471AP2/ERF domain
SMARTSM003803.3E-2042111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-1342106IPR001471AP2/ERF domain
PRINTSPR003674.6E-64354IPR001471AP2/ERF domain
CDDcd000182.63E-24140201No hitNo description
SuperFamilySSF541711.24E-17140201IPR016177DNA-binding domain
PfamPF008471.6E-11140191IPR001471AP2/ERF domain
SMARTSM003803.4E-25141205IPR001471AP2/ERF domain
PROSITE profilePS5103218.386141199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17141200IPR001471AP2/ERF domain
PRINTSPR003674.6E-6181201IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAKSTSQQVQ IRESNGNVVM KTKTKRTRRS VPRDSPPQRS SIYRGVTRHR WTGRYEAHLW  60
DKNCWNESQN KKGRQGAYDD EEAAAHAYDL AALKYWGQET ILNFPLTTYQ KELKEMEGQS  120
REEYIGSLRR KSSGFSRGVS KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYATQEEAAT  180
AYDIAAIEYR GLNAVTNFDL SRYIKWLKPS NDVVYDNNHI LTVDSILPSP KQELNLGLFP  240
SDQNQSSTDS ATAEPIAVPP SHRSTTTTSA LGLLLQSSKF KEMMEMNSAT ECPSTPSSSE  300
QLERRRCLFP DDVQTFFACE TSGSYCYGEA EDAIFSDFNS FIPPPLSHYD FVD
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818081e-107LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132561e-107LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022988600.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-110AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S3B9P00.0A0A1S3B9P0_CUCME; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_008443823.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-101ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]