PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018596
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 332aa    MW: 37483.6 Da    PI: 9.3467
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018596genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.32.1e-55171431129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeel+++yL kkv + ++++ + i evd++k+ePwdLp k+k +e+ewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ +++lv
  Cla018596  17 LPPGFRFHPTDEELISHYLSKKVVDANFSC-KPIGEVDLNKSEPWDLPWKAKMGEREWYFFCLRDRKYPTGLRTNRATESGYWKATGKDKEIYR-GKTLV 114
                79****************************.88***************888999****************************************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                g+kktLvfy grapkgek++Wvmhe+rle
  Cla018596 115 GMKKTLVFYGGRAPKGEKSNWVMHEFRLE 143
                **************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-6214167IPR003441NAC domain
PROSITE profilePS5100557.53217167IPR003441NAC domain
PfamPF023652.3E-2918142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEQNMTAPVL EDSQIVLPPG FRFHPTDEEL ISHYLSKKVV DANFSCKPIG EVDLNKSEPW  60
DLPWKAKMGE REWYFFCLRD RKYPTGLRTN RATESGYWKA TGKDKEIYRG KTLVGMKKTL  120
VFYGGRAPKG EKSNWVMHEF RLEGKPSAIN LPNTAKNEWV ISRVFQKSCG GKKVHISGLV  180
KLGSCSSALP PLKDSSSSSS SFKIKPVPEL THVPCFSNTM DSTQRTLPKI NDCSFNFSSF  240
FPTIFQRNTQ PNPLHNPQSI SSFPLNLQFQ NMVRTEGEGR ISVSQETGLT TDMNNEISSV  300
VSNLEMGRLP FDNQHNPSAS TVPLNPHIVW NY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-541317316174NAC domain-containing protein 19
3swm_B2e-541317316174NAC domain-containing protein 19
3swm_C2e-541317316174NAC domain-containing protein 19
3swm_D2e-541317316174NAC domain-containing protein 19
3swp_A2e-541317316174NAC domain-containing protein 19
3swp_B2e-541317316174NAC domain-containing protein 19
3swp_C2e-541317316174NAC domain-containing protein 19
3swp_D2e-541317316174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137588.10.0PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-129NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0A0LVJ80.0A0A0A0LVJ8_CUCSA; Uncharacterized protein
STRINGXP_008444101.10.0(Cucumis melo)
STRINGXP_004173604.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-130NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]