PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016274
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 286aa    MW: 31374 Da    PI: 9.3142
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016274genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP108.78.5e-3421108280
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaessss 80 
                +g+kdrhsk+ T++g+RdRRvRlsa++a+rf+d+qd+LG+d++sk+++WL+++ak ai++l ++          ++++ ++ + +ss+
  Cla016274  21 TGRKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDRLGYDRPSKAVDWLIKKAKFAIDKLQELppyfpiangFTDPNPKTGETESSE 108
                79**************************************************************988888886333333332222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-3121101IPR005333Transcription factor, TCP
PROSITE profilePS5136931.9642381IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MKTSAAGEIV PVQGGHILRS TGRKDRHSKV FTAKGPRDRR VRLSAHTAIR FYDVQDRLGY  60
DRPSKAVDWL IKKAKFAIDK LQELPPYFPI ANGFTDPNPK TGETESSEFG SQLHLPSAVE  120
NFAPPLESLF PMSSATTSTN FQGYPVNFIL RPTDPARDLA LSLHNLHDSP LIPSEEDGNH  180
SPANDQRLIS DSIPAGYEGD EAGLWLQQPL LGQNSAAAFS QRVSVQASLG HSLPIRGWSN  240
QNRQLSVLGG RFDGSSELRT PSRIRGEGRE DGVVSGTHSS PPNYRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-212881154Putative transcription factor PCF6
5zkt_B7e-212881154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022930891.11e-144transcription factor TCP10-like
SwissprotO822779e-43TCP10_ARATH; Transcription factor TCP10
TrEMBLA0A2C9UT114e-76A0A2C9UT11_MANES; Uncharacterized protein
STRINGcassava4.1_011082m6e-77(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.14e-45TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]