PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016005
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 320aa    MW: 36468.7 Da    PI: 9.4853
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016005genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.68.2e-17125214198
                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                f+k +++s+v+   +l lp +f+++h      e+ +ltl de+ ++++ k+  +k++    l++GW++F  +++L +gD +vF+l++ +ef  +v ++r
  Cla016005 125 FVKPMLQSHVTGGFWLGLPVHFCKTHlP---LEDEMLTLVDEDDNEFQTKYLADKTG----LSGGWRGFSIDHQLVDGDALVFQLTKPTEF--KVYIIR 214
                89************************53...34558***************666666....***********************9876666..888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-21116215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-24118215IPR015300DNA-binding pseudobarrel domain
CDDcd100177.25E-27123214No hitNo description
SMARTSM010198.6E-20125216IPR003340B3 DNA binding domain
PfamPF023625.5E-15125215IPR003340B3 DNA binding domain
PROSITE profilePS5086311.843125216IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVESNLTYEE CRLEENKKRM EELNLNKLAD ALKFSSPKSS PTKQLKRPRQ PLDKSSFSVR  60
RSSRFADKPP PNYKEVPIEP LPGIRRTYQR RDLLNRIYAS QEERQYAIDR ARDLQSSLES  120
RYPSFVKPML QSHVTGGFWL GLPVHFCKTH LPLEDEMLTL VDEDDNEFQT KYLADKTGLS  180
GGWRGFSIDH QLVDGDALVF QLTKPTEFKV YIIRAYNLED REDTNEDSDV TQLEKSSKRN  240
TKSSGHKSRA NNSEDKGDNG EDSADVSQLE KSGKKTTKSS GRKSRANKSK DKADNGADLD  300
VPELEKSGKR ITRSSSKGQK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817924e-70LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132554e-70LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454939.11e-179PREDICTED: B3 domain-containing protein At3g19184-like isoform X1
SwissprotQ1G3M38e-86Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBLA0A1S3BZ911e-177A0A1S3BZ91_CUCME; B3 domain-containing protein At3g19184-like isoform X1
STRINGXP_008454939.11e-178(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.16e-83B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]