PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014860
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 184aa    MW: 20167.9 Da    PI: 6.3295
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014860genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.91.4e-37121121100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C++apyf +e  +++f ++hk+FGasn +kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+++l+a++a+l+e
  Cla014860  12 PCGACKFLRRKCVNGCIFAPYFRHELgASQFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVMNLRAQVAYLRE 111
                7***********************9989********************************************************************9998 PP

     DUF260 100 e 100
                +
  Cla014860 112 Q 112
                7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.66711113IPR004883Lateral organ boundaries, LOB
PfamPF031958.2E-3612110IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAASSSSPSS PPCGACKFLR RKCVNGCIFA PYFRHELGAS QFSAIHKVFG ASNASKLLAH  60
LPVSHRCEAA VTISYEAQAR LQDPIYGCVS HIFALQQQVM NLRAQVAYLR EQAAQILLNN  120
YTTRNPIELP YEKSSFYSDD PLLDLQSWLL AESCSAAAPE FESAAVPYFE MSVVDSNLAG  180
DFCC
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132551e-118LN713255.1 Cucumis melo genomic chromosome, chr_1.
GenBankLN6818001e-118LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004150342.11e-118PREDICTED: LOB domain-containing protein 29
SwissprotQ9M2J71e-61LBD29_ARATH; LOB domain-containing protein 29
TrEMBLA0A0A0K5D41e-118A0A0A0K5D4_CUCSA; Uncharacterized protein
STRINGGLYMA13G18210.16e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2470833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-61lateral organ boundaries-domain 29