PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014830
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 138aa    MW: 15669.4 Da    PI: 4.8049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014830genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.4e-202878255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               +y+GVr+++ +g+++AeIrd +    r  r++lg+f taeeAa+a+++a+ +++g
  Cla014830 28 KYRGVRRRP-WGKFAAEIRDSRR---RgVRIWLGTFETAEEAARAYDRAAFRMRG 78
               8********.**********433...34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.37E-292887No hitNo description
PfamPF008475.2E-152878IPR001471AP2/ERF domain
PROSITE profilePS5103224.1312886IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-322888IPR001471AP2/ERF domain
SMARTSM003803.2E-362892IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-242887IPR016177DNA-binding domain
PRINTSPR003678.1E-122940IPR001471AP2/ERF domain
PRINTSPR003678.1E-125268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MEDRHQRALE INGGGGGGGG GGGDMCVKYR GVRRRPWGKF AAEIRDSRRR GVRIWLGTFE  60
TAEEAARAYD RAAFRMRGQL ATLNFPEEYP LMNVSSLESQ SSSLQNDETE RKEEAVFEFE  120
CLDEKLLDEL LDFDKETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-33181264114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733438.14e-44ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC57e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2J6KGH78e-43A0A2J6KGH7_LACSA; Uncharacterized protein
STRINGXP_010039174.13e-39(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.12e-20ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]