PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014061
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 264aa    MW: 29144.1 Da    PI: 8.0439
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014061genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.5e-18115169256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++tkeq   Lee F+ +++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Cla014061 115 RKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLLPRQVEVWFQNRRARTK 169
                788899***********************************************98 PP

2HD-ZIP_I/II123.69.6e-40115204191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLEesF+ +++L+p++K++lareL+l prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eL+ +l
    Cla014061 115 RKKLRLTKEQSALLEESFKLHSTLNPKQKQALARELNLLPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELK-AL 204
                  69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-1789172IPR009057Homeodomain-like
SuperFamilySSF466897.1E-18106172IPR009057Homeodomain-like
PROSITE profilePS5007117.248111171IPR001356Homeobox domain
SMARTSM003891.9E-15113175IPR001356Homeobox domain
PfamPF000462.0E-15115169IPR001356Homeobox domain
CDDcd000862.08E-16115172No hitNo description
PROSITE patternPS000270146169IPR017970Homeobox, conserved site
PfamPF021831.3E-10171205IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.9E-25171214IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGFDDLSNTG LLLGLGLNLP SNPPHLSQKP KKPLDLLCFP PPESEPSLTL GLSTVDTYPS  60
ETADLSRQPS PHSAISSFSG GKVKRERDVS GGEDIEEEKA SSRVSDEEED GSNARKKLRL  120
TKEQSALLEE SFKLHSTLNP KQKQALAREL NLLPRQVEVW FQNRRARTKL KQTEVDCEFL  180
KRCCETLTDE NRRLQKELQE LKALKLAQPL FMQMPAATLT MCPSCERIGG GAATVNGDGN  240
SKGPFSMAPN PRFYKAFTKP SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163171RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818751e-138LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132621e-138LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440442.11e-173PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-100HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A1S3B1441e-171A0A1S3B144_CUCME; homeobox-leucine zipper protein HAT22-like
STRINGXP_008440442.11e-172(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-81HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]