PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013643
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 538aa    MW: 60808.2 Da    PI: 4.4916
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013643genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92.1e-49171432128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                ppGfrFhPtdeelv +yLk k+ ++kl+l ++i+e+d+yk+eP++Lp + k+k+++++w+fFs+r+++y++ +r +rat+ gyWkatg+d+ + + ++++
  Cla013643  17 PPGFRFHPTDEELVLYYLKFKICKRKLKL-DIIRETDVYKWEPEELPgQsKLKTGDRQWFFFSPREHRYPNASRLSRATRYGYWKATGRDRIIQC-NSRN 114
                8****************************.99**************963589999**************************************99.999* PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy+grap+ge+tdWvmhey+l
  Cla013643 115 VGVKKTLVFYQGRAPNGERTDWVMHEYTL 143
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-5612166IPR003441NAC domain
PROSITE profilePS5100552.83316166IPR003441NAC domain
PfamPF023651.9E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MSTVSSSMGL CDEGDWPPGF RFHPTDEELV LYYLKFKICK RKLKLDIIRE TDVYKWEPEE  60
LPGQSKLKTG DRQWFFFSPR EHRYPNASRL SRATRYGYWK ATGRDRIIQC NSRNVGVKKT  120
LVFYQGRAPN GERTDWVMHE YTLDEDELKR CKNVKDYYAL YKLFKKSGPG PKNGEQYGAP  180
FREEDWVDDA DGQEPQVKKL DEVDSVVRER ENGQIQLTSD DIEELMKQIV DDPVLESPSA  240
SGYHQFDSGV QVDDKEETVS TMIDAYSRDH ILPEPDKVYH SSGQPCDLHA TFDFTQSGFS  300
QLQSFEGEVS SAPKYCEEEE DFLEINDLIG PEPTPVANVN PLGNLPPSEL DGLSDLDLFH  360
DANMFLRDLG PIVPETVLDP YLNALDIDVA NNLNGNLPYD PYQQNQMDNG FWKNNETENA  420
FSFPESHGQF VTQSTLGGGY ESVSSSAAGT RENQSANDGG GSASWFSSNL WAFVESIPTT  480
PASASENVNR AFVRMSSFSR LRLNTLNTLN TNVAVRNLET GARRRTGNIR LWGNCIAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-421717218171NO APICAL MERISTEM PROTEIN
1ut4_B6e-421717218171NO APICAL MERISTEM PROTEIN
1ut7_A6e-421717218171NO APICAL MERISTEM PROTEIN
1ut7_B6e-421717218171NO APICAL MERISTEM PROTEIN
3swm_A7e-421717221174NAC domain-containing protein 19
3swm_B7e-421717221174NAC domain-containing protein 19
3swm_C7e-421717221174NAC domain-containing protein 19
3swm_D7e-421717221174NAC domain-containing protein 19
3swp_A7e-421717221174NAC domain-containing protein 19
3swp_B7e-421717221174NAC domain-containing protein 19
3swp_C7e-421717221174NAC domain-containing protein 19
3swp_D7e-421717221174NAC domain-containing protein 19
3ulx_A9e-421314312140Stress-induced transcription factor NAC1
4dul_A6e-421717218171NAC domain-containing protein 19
4dul_B6e-421717218171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00178DAPTransfer from AT1G34180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818210.0LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456695.10.0PREDICTED: NAC domain-containing protein 17-like
TrEMBLA0A1S3C3X90.0A0A1S3C3X9_CUCME; NAC domain-containing protein 17-like
STRINGXP_008456695.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.11e-126NAC domain containing protein 16