PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013523
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 319aa    MW: 34941.8 Da    PI: 8.0631
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013523genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.72.5e-3550151289
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 
                +++kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l +++  ++++c    ss+ a+++s+g             
  Cla013523  50 TARKDRHSKVYTAKGLRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLSDLPPCNPNAC----SSVPAQTESIGidvvtdrcesskn 145
                789*************************************************************43333445....222223233333344433322222 PP

        TCP  89 .....k 89 
                     +
  Cla013523 146 hdflfQ 151
                233330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3250180IPR005333Transcription factor, TCP
PROSITE profilePS5136932.87852110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDSNATETLN KSFLNPPLEE HATRRTRMGF NTIGGEILQV PGGGLVVRST ARKDRHSKVY  60
TAKGLRDRRV RLSAHTAIQF YDVQDRLGYD RPSKAVDWLI KKAKSAIDKL SDLPPCNPNA  120
CSSVPAQTES IGIDVVTDRC ESSKNHDFLF QSQFSENLIP PPSPVESAVG FQSCQNLGLS  180
LQTQNSPQNV HHHHQTVFYT ASSGNSGPGF DDGFEKIVAW NSNVFGSIPI FNQSSAVFPQ  240
RGPLQSSLET PVPHYTWNDL SVVSAEKRHP NPIHEHSSAS IPRFISDGMP HLDVHGRFQS  300
DGDGGGGKAS PPSSSYSRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2357110154Putative transcription factor PCF6
5zkt_B1e-2357110154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819210.0LN681921.1 Cucumis melo genomic scaffold, anchoredscaffold00039.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149285.11e-169PREDICTED: uncharacterized protein LOC101204399
TrEMBLA0A0A0KF061e-175A0A0A0KF06_CUCSA; Uncharacterized protein
STRINGXP_004149285.11e-169(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-40TCP family protein