PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013475
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 326aa    MW: 37646.7 Da    PI: 5.9326
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013475genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.51.3e-49271543128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                pGfrFhPtdeelv++yL++kv++k+l++ e ik++diyk++PwdLp++ ++  +ekewyfF+kr +ky+++ r+nr+t  g+Wkatg dk+++ + ++ +
  Cla013475  27 PGFRFHPTDEELVNFYLRRKVHNKPLPI-ELIKQIDIYKYNPWDLPHASNGslGEKEWYFFCKRGRKYKNSVRPNRVTGCGFWKATGIDKPIYINdRSIV 125
                9***************************.89***************5333334899*************************************9867778 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vglkktLv+y+g+a kg+kt+W+m+e+rl
  Cla013475 126 VGLKKTLVYYRGSAGKGTKTEWMMNEFRL 154
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.13925188IPR003441NAC domain
SuperFamilySSF1019411.44E-5425188IPR003441NAC domain
PfamPF023651.9E-2527154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MTNSSSQFPD MAAVDNDGDD DSQFPLPGFR FHPTDEELVN FYLRRKVHNK PLPIELIKQI  60
DIYKYNPWDL PHASNGSLGE KEWYFFCKRG RKYKNSVRPN RVTGCGFWKA TGIDKPIYIN  120
DRSIVVGLKK TLVYYRGSAG KGTKTEWMMN EFRLPSSSSS SSDPFRRNII TNNLHEAEIW  180
TLCRIFKRNI SAKKAINAPW REVPSAKSRT VENMNFRATT NIDINRYFDD DEQSSYITFT  240
SNNSFINFDH VNDTQNFDQS QMSHTDRFMT NFCNSTDLPP STDHNSSANV SPSSSSFSDF  300
DEDATDLFGY EKWEELKSIL ECDFDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47161947171NO APICAL MERISTEM PROTEIN
1ut4_B1e-47161947171NO APICAL MERISTEM PROTEIN
1ut7_A1e-47161947171NO APICAL MERISTEM PROTEIN
1ut7_B1e-47161947171NO APICAL MERISTEM PROTEIN
3swm_A1e-471619410174NAC domain-containing protein 19
3swm_B1e-471619410174NAC domain-containing protein 19
3swm_C1e-471619410174NAC domain-containing protein 19
3swm_D1e-471619410174NAC domain-containing protein 19
3swp_A1e-471619410174NAC domain-containing protein 19
3swp_B1e-471619410174NAC domain-containing protein 19
3swp_C1e-471619410174NAC domain-containing protein 19
3swp_D1e-471619410174NAC domain-containing protein 19
4dul_A1e-47161947171NAC domain-containing protein 19
4dul_B1e-47161947171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456334.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK551e-79NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1S3C3270.0A0A1S3C327_CUCME; transcription factor JUNGBRUNNEN 1-like
STRINGXP_008456334.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.19e-78NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]