PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012835
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 268aa    MW: 31459.6 Da    PI: 10.2101
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012835genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.45e-20997186
   trihelix  1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
               +W+++e+++ i++r ++e++l +++       +kk+lWe  s++mre+gf r++ qCk+kw+nl  ryk  +++ k+       +cp+f++++
  Cla012835  9 QWSEEETREFIRIRADLEKDLTAAStgeapaaKKKTLWEMASARMREKGFWRTADQCKCKWKNLLSRYKGKETSHKE----FGWQCPFFEEIH 97
               7*********************8655556666**************************************9999997....4668*****998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-17898No hitNo description
CDDcd122037.95E-18980No hitNo description
PROSITE profilePS500906.981073IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MPATAQQHQW SEEETREFIR IRADLEKDLT AASTGEAPAA KKKTLWEMAS ARMREKGFWR  60
TADQCKCKWK NLLSRYKGKE TSHKEFGWQC PFFEEIHAVF TERGKVMHRL LLEPEACSIA  120
TKKRVRERSL EEYSNLKQLN EDETEEEVTL TQSNSQKRKA ARTLPAKSLG ATDSKNSSSS  180
VSNEILEMLK GFFQWQQRME MGWRGILERH YNKRRLFEXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXRNGANQ WRSSRGRG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132611e-165LN713261.1 Cucumis melo genomic chromosome, chr_7.
GenBankLN6818731e-165LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148982.11e-127PREDICTED: trihelix transcription factor GT-3b-like
TrEMBLA0A0A0KV131e-126A0A0A0KV13_CUCSA; Uncharacterized protein
STRINGGLYMA01G35370.21e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17813385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.14e-20Trihelix family protein