PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011248
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 490aa    MW: 54230.8 Da    PI: 7.5
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011248genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1163.7e-36602021128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........sgyWk 84 
                lp+G++F+Ptd+el+ e+L++kv++k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++        + +W+
  Cla011248  60 LPAGVKFDPTDQELI-EHLEAKVQSKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqggETRWH 157
                799************.99*********5553344444434666646**********.555666799******************73334555544778** PP

        NAM  85 atgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Cla011248 158 KTGKTRPVMA-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 202
                **********.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-3856221IPR003441NAC domain
PROSITE profilePS5100533.22660221IPR003441NAC domain
PfamPF023652.2E-1661202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MRNNSKIISS IVVGGGSSGG GGGGSDSLLD AKLEQHQMCG SKHCPGCGHK LEGRPDWVGL  60
PAGVKFDPTD QELIEHLEAK VQSKDMKSHP LIDEFIPTIE GEDGICYTHP EKLPGVTRDG  120
LSRHFFHRPS KAYTTGTRKR RKIQTECDLQ GGETRWHKTG KTRPVMANGK QKGCKKILVL  180
YTNFGKNRKP EKTNWVMHQY HLGQHEEEKE GELVVSKIFY QTQPRQCNWS ERSLAAAEGS  240
FEVTNLSRRE ITATTTGSCS LMTQADDMSP AATAGAGCSI SSFSSLDIQQ HLKSDHFGFV  300
PFRTTFDEVG MEDSSVERKI GSKDGRGGGS GSGGGSGEFE LGDHHHQRTA ALDHHHHQLV  360
VAHNDHHHHH SVVNHHLPTT AFHVTNPTHQ ISTIISPPPL LLLDHNSYQH HHHHHHHSPI  420
ILQNQPFHQQ EEGESEHHKI GGRSASGLEE LIMGCTSSSI KHQPVSLSLS PLLLLLLLLY  480
KLKFIPNYTF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450799.10.0PREDICTED: NAC transcription factor NAM-A1-like
SwissprotQ9M0F81e-154NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A1S3BQR10.0A0A1S3BQR1_CUCME; NAC transcription factor NAM-A1-like
STRINGXP_008450800.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-138NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]