PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010881
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 235aa    MW: 26856.4 Da    PI: 10.1629
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010881genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.23.9e-50141381128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelv +yL kk+ +++l++  vi+++d+++++PwdLp      e+e yfFs+r+ ky++g+r+nrat sgyWkatg d++++s+ +++l
  Cla010881  14 LPPGFRFHPTDEELVLQYLMKKALSSPLPA-AVIPDADVCRFDPWDLPGD---LERERYFFSTREAKYSNGRRSNRATGSGYWKATGIDRRIVSSkENRL 109
                79****************************.89***************44...46899**********************************99867778 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg kktLvfy+g+ p+g++tdWvmheyrl
  Cla010881 110 VGFKKTLVFYTGKPPNGSRTDWVMHEYRL 138
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-6010168IPR003441NAC domain
PROSITE profilePS5100557.15414168IPR003441NAC domain
PfamPF023652.7E-2615138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MENLTFLKNG VLRLPPGFRF HPTDEELVLQ YLMKKALSSP LPAAVIPDAD VCRFDPWDLP  60
GDLERERYFF STREAKYSNG RRSNRATGSG YWKATGIDRR IVSSKENRLV GFKKTLVFYT  120
GKPPNGSRTD WVMHEYRLVG SPEAPPSTFN DGLSTLNRNW VLCRIFLKKR STRERDEKKN  180
ICKPVFHQFL RTRNGTDLNV APCSSSSGSS GVTEISVNNH QEQEETSSCN SFRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-501217415171NO APICAL MERISTEM PROTEIN
1ut4_B1e-501217415171NO APICAL MERISTEM PROTEIN
1ut7_A1e-501217415171NO APICAL MERISTEM PROTEIN
1ut7_B1e-501217415171NO APICAL MERISTEM PROTEIN
3swm_A1e-501217418174NAC domain-containing protein 19
3swm_B1e-501217418174NAC domain-containing protein 19
3swm_C1e-501217418174NAC domain-containing protein 19
3swm_D1e-501217418174NAC domain-containing protein 19
3swp_A1e-501217418174NAC domain-containing protein 19
3swp_B1e-501217418174NAC domain-containing protein 19
3swp_C1e-501217418174NAC domain-containing protein 19
3swp_D1e-501217418174NAC domain-containing protein 19
4dul_A1e-501217415171NAC domain-containing protein 19
4dul_B1e-501217415171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818744e-94LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132614e-94LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152126.11e-152PREDICTED: NAC transcription factor 25
SwissprotQ9FY938e-94NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0A0KTV61e-150A0A0A0KTV6_CUCSA; NAC domain-containing protein
STRINGXP_004152126.11e-151(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-95NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]