PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010429
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 163aa    MW: 18020.2 Da    PI: 7.0838
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010429genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.92.1e-4410108199
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +CaaCk+lrrkC +dC++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i++lq+q+ +l++el+++++
  Cla010429  10 PCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISALQRQVIRLQKELDATNA 108
                7*********************************************************************************************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.6739110IPR004883Lateral organ boundaries, LOB
PfamPF031959.3E-4410107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MASSSFSNSP CAACKFLRRK CLADCIFAPY FPPEEPTKFA NVHKIFGASN VSKLLNEVQP  60
HQREDAVNSL AYEAEARMKD PVYGCVGAIS ALQRQVIRLQ KELDATNADL VRYASGGARP  120
PSQFGRRAAT ASMTRHHSDL SFLSPLSSND HDDPYCHDKE EDN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132631e-157LN713263.1 Cucumis melo genomic chromosome, chr_9.
GenBankLN6818901e-157LN681890.1 Cucumis melo genomic scaffold, anchoredscaffold00048.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458801.11e-109PREDICTED: LOB domain-containing protein 25
RefseqXP_008458802.11e-109PREDICTED: LOB domain-containing protein 25
RefseqXP_008458803.11e-109PREDICTED: LOB domain-containing protein 25
SwissprotQ8L8Q32e-71LBD25_ARATH; LOB domain-containing protein 25
TrEMBLA0A0A0KSE81e-100A0A0A0KSE8_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s35280.12e-76(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109134112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27650.11e-72LOB domain-containing protein 25