PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010317
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 331aa    MW: 37906.7 Da    PI: 7.0637
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010317genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.59e-56191451129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdeel+++yL +kv ++++++  +i e+d++k+ePwdLp ++k +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkdke+++ ++++v
  Cla010317  19 LPPGFRFHPTDEELITHYLSRKVLNTNFTA-IAIGEADLNKSEPWDLPGRAKMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDKEIFR-GKRVV 116
                79*************************999.88***************99999*****************************************.99*** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                g+kktLvfy+grapkgek++Wvmhe+rle
  Cla010317 117 GMKKTLVFYTGRAPKGEKSNWVMHEFRLE 145
                **************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-6416171IPR003441NAC domain
PROSITE profilePS5100559.13519171IPR003441NAC domain
PfamPF023651.3E-2920144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
METNLWKTQN ECEEEHLELP PGFRFHPTDE ELITHYLSRK VLNTNFTAIA IGEADLNKSE  60
PWDLPGRAKM GEKEWYFFCV KDRKYPTGLR TNRATESGYW KATGKDKEIF RGKRVVGMKK  120
TLVFYTGRAP KGEKSNWVMH EFRLEGKFPL SPTLILKPAK NEWVICRIFN KSSADKATLN  180
NPFHTQRDSP ALPPLMEYSQ SQTPYNPDPR ASRVTCFSNN QPFNHDRDTK PYTTTSDMLY  240
NFKTNHFSSS SNPPPPPPFS FPNPPPPDSV WTPGNSLVRM LLENQSGSGL MNPKVENISG  300
FSHGIGMMED DHHNPSMASE DPLDLETLWD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-541617414168NO APICAL MERISTEM PROTEIN
1ut4_B7e-541617414168NO APICAL MERISTEM PROTEIN
1ut7_A7e-541617414168NO APICAL MERISTEM PROTEIN
1ut7_B7e-541617414168NO APICAL MERISTEM PROTEIN
3swm_A8e-541617417171NAC domain-containing protein 19
3swm_B8e-541617417171NAC domain-containing protein 19
3swm_C8e-541617417171NAC domain-containing protein 19
3swm_D8e-541617417171NAC domain-containing protein 19
3swp_A8e-541617417171NAC domain-containing protein 19
3swp_B8e-541617417171NAC domain-containing protein 19
3swp_C8e-541617417171NAC domain-containing protein 19
3swp_D8e-541617417171NAC domain-containing protein 19
4dul_A7e-541617414168NAC domain-containing protein 19
4dul_B7e-541617414168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023551147.11e-151NAC domain-containing protein 79-like
SwissprotQ9FLJ25e-96NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0A0KSA11e-131A0A0A0KSA1_CUCSA; Uncharacterized protein
TrEMBLA0A1S3C9F21e-131A0A1S3C9F2_CUCME; NAC domain-containing protein 92-like isoform X2
STRINGXP_004171621.11e-133(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2462033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-96NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]