PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010176
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 353aa    MW: 37417.4 Da    PI: 9.7333
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010176genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP130.91.2e-40602212125
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++            
  Cla010176  60 PPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTISAPshlrtsyfsptq 159
                789******************************************************************9998777777777755555666666776543 PP

        TCP  89 .......kaaksaakskksqksaasalnlakesr...........................akarararer 125
                       +           ++++++++nl ++s+                           +k r+++ e+
  Cla010176 160 favrtrsD---------LWDRNNNHNHNLVDDSStflnfnapnyvnvfkqdqggidvteagKKRRSEQSES 221
                33222220.........223333333444444444444444444555555556666655544444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3965185IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92366120IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDGENGIRRP NFPLQLLEKK KEEQQQPCSS SANNGGTTTT TITTTPNPNL QSSSSPKKPP  60
PKRATTKDRH TKVDGRGRRI RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAVIAA  120
TGTGTIPANF TSLNISLRSS GSTISAPSHL RTSYFSPTQF AVRTRSDLWD RNNNHNHNLV  180
DDSSTFLNFN APNYVNVFKQ DQGGIDVTEA GKKRRSEQSE SSSDNYLVQT STGSIPASQS  240
SPLPATFWMV TNPSNQGSDP MWTFPSVGNS SMLRGAGAGG GGGGGGGGFH FMNLPPPMAL  300
LPSGQQLGTG IGSGGGPATE SHLGMLAALS AYRTTMPGLS VSESPTSNNP DQS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446337.10.0PREDICTED: transcription factor TCP15
TrEMBLA0A1S3BFM60.0A0A1S3BFM6_CUCME; transcription factor TCP15
STRINGXP_008446337.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-48TCP family protein