PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009182
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 172aa    MW: 18645.2 Da    PI: 8.4917
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009182genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260146.29e-46171161100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+C ++Cv+apyfpa+qp+kfanvhk+FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq++ l+++lal+++e
  Cla009182  17 PCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAE 116
                7**********************************************************************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.47416117IPR004883Lateral organ boundaries, LOB
PfamPF031955.1E-4517114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKTENGRKQG GGTGAAPCAA CKLLRRRCGE ECVFAPYFPA DQPHKFANVH KVFGASNVNK  60
MLQELPIHQR GDAVSSLVYE ANARVRDPVY GCVGAISSLQ QQIDALQTQL ALAQAEVVHL  120
RVRQTAPFSN YGLSPTSPSN SGSPSSRLMG SQSRPMFEMD MVVDQAMGDS MW
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132661e-136LN713266.1 Cucumis melo genomic chromosome, chr_12.
GenBankLN6819311e-136LN681931.1 Cucumis melo genomic scaffold, anchoredscaffold00049.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145462.11e-108PREDICTED: LOB domain-containing protein 4-like
SwissprotQ9SHE94e-73LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A0A0LYG01e-108A0A0A0LYG0_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s11610.13e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133434105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.13e-56LOB domain-containing protein 4