PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla008721
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family TCP
Protein Properties Length: 182aa    MW: 20185.6 Da    PI: 5.3317
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla008721genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.53.1e-3138105871
        TCP   8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....s 71 
                 +++h+kv gRdRR+Rl+ +caar+F+L++eLG ++d++t+eWLl++a+p+i++ltg +  sa     
  Cla008721  38 PKDRHAKVHGRDRRIRLPPLCAARVFQLTRELGNKTDGQTVEWLLKKAEPSIIALTGKDIASAsldfP 105
                59********************************************************5555533332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.0E-2738123IPR005333Transcription factor, TCP
PROSITE profilePS5136925.433892IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGSKNMRVKK ATSNSPRNAP KSNSPNASES KLIPSKAPKD RHAKVHGRDR RIRLPPLCAA  60
RVFQLTRELG NKTDGQTVEW LLKKAEPSII ALTGKDIASA SLDFPGCKPF DPTSSNLSTT  120
TSCFEEETFG VNNYAFPMVN ECIPLPNYEF DLVSDFDMEL FAHHIATLQE VAENSEQEDD  180
DD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819350.0LN681935.1 Cucumis melo genomic scaffold, unanchored_scaffold00115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465370.11e-118PREDICTED: transcription factor TCP7
TrEMBLA0A1S3CNQ21e-116A0A1S3CNQ2_CUCME; transcription factor TCP7
STRINGXP_008465370.11e-117(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-28TCP family protein