PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla007095
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family LBD
Protein Properties Length: 306aa    MW: 33073.6 Da    PI: 8.5623
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla007095genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-314107199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e++
  Cla007095   4 SCNGCRVLRKGCSENCSIRPCLqwiktPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAV 103
                6*************************************************************************************************99 PP

     DUF260  96 llke 99 
                l ++
  Cla007095 104 LKGA 107
                8766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.7E-941301IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.1343109IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKT PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PINSEAAATG  120
DGPPLKAYDI RHVSKDENSV ASNDGGANRR VKTRCRFKRS AVKAKGSKGI DSTVDESTRR  180
FCSTELNRSS SGESSLSHQS DSRHLENESK ETESMISVET AEVSPPPMPS VLFRSESSSV  240
LKSTGQDGGV VAIPQSELAL ELTLGMEPAL RAQHVIPMKK RKIEADVGFR PNNDTCNTVL  300
GLDFSA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
GenBankLN6818560.0LN681856.1 Cucumis melo genomic scaffold, anchoredscaffold00062.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461588.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-105LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0A0LCG60.0A0A0A0LCG6_CUCSA; Uncharacterized protein
STRINGGLYMA19G06280.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-101LOB domain-containing protein 41